Agilent Low Input Quick Amp WT Labeling Protocol User Guide

Use Agilent One-Color Microarray-Based Exon Analysis Low Input Quick Amp WT Labeling Protocol for gene expression analysis


Agilent Low Input Quick Amp WT Labeling Protocol User Guide - cover page
Brand
Agilent
Document type
User Manual
Language
English
Pages
80
File format
PDF
File size
983 KB
Published
06 June, 2012
Updated
01 October, 2023
MD5 checksum
AD93B2A8C922567B2D274B692753269D

About this manual

This document describes recommended procedures for preparing and labeling complex biological targets, hybridizing, washing, scanning, and extracting features from Agilent 60-mer oligonucleotide microarrays. It is specifically designed for use with the Low Input Quick Amp WT Labeling kit and Agilent Gene Expression Exon microarrays.

What's inside

  • Procedural Notes
  • Sample Preparation
  • Labeling Reaction
  • Purification of Labeled RNA
  • Hybridization
  • Microarray Wash
  • Scanning and Feature Extraction
  • Quality Assessment
  • Preventing Ozone-Related Problems
  • Data Normalization

Specifications

Starting input requirement (2-pack, 4-pack, 8-pack microarrays)25 ng of total RNA
Starting input requirement (1-pack microarray)100 ng of total RNA
Recommended Specific Activity for hybridization15 pmol cyanine 3 per ug cRNA

Frequently asked questions

What safety level rules should be followed?

Users should generally follow Biosafety Level 1 (BL1) safety rules.

What is the minimum amount of total RNA required for 2-pack, 4-pack, and 8-pack microarrays?

The starting input requirement is 25 ng of total RNA.

How much total RNA is needed for a 1-pack microarray?

The input requirement is 100 ng of total RNA.

What is the recommended specific activity for hybridization?

The recommended Specific Activity is increased to 15 pmol cyanine 3 per ug cRNA.

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