Agilent GeneSpring GX 9 Quick Start Guide

About this manual

This guide helps you get started with Agilent GeneSpring GX 9, a software for visualizing and analyzing genomic expression data. It includes instructions for downloading a trial, setting up a demo experiment using provided data files, and performing basic pathway analysis. The guide also explains how to migrate data from older versions and access additional pathway resources.

What's inside

• What is GeneSpring GX 9?
• Where do I get GeneSpring GX 9?
• How do I get started with GeneSpring GX 9?
• Is there a demo experiment I can run?
• How can I get more Pathways?
• Where do I get GSEA compatible Gene Sets?
• Where is my data from GeneSpring GX 7?

Frequently asked questions

Is there a demo experiment I can run?

Yes, you can re-create the experiment from the demonstration project since the original data is provided with the installation.

Where do I get GSEA compatible Gene Sets?

Download the file “MSigDB.xml” from the BROAD Institute website and import it into GeneSpring GX 9 using the “Import BROAD GSEA Gene Sets” utility.

Where is my data from GeneSpring GX 7?

Data from GeneSpring GX 7 is not automatically available in GX 9, but migration tools are provided to re-create experiments or import normalized data.